Standardization of whole slide image morphologic assessment with definition of a new application: Digital slide dynamic morphometry

نویسندگان

  • Giacomo Puppa
  • Mauro Risio
  • Kieran Sheahan
  • Michael Vieth
  • Inti Zlobec
  • Alessandro Lugli
  • Sara Pecori
  • Lai Mun Wang
  • Cord Langner
  • Hiroyuki Mitomi
  • Takatoshi Nakamura
  • Masahiko Watanabe
  • Hideki Ueno
  • Jacques Chasle
  • Carlo Senore
  • Stephen A. Conley
  • Paulette Herlin
  • Gregory Y. Lauwers
چکیده

BACKGROUND In histopathology, the quantitative assessment of various morphologic features is based on methods originally conceived on specific areas observed through the microscope used. Failure to reproduce the same reference field of view using a different microscope will change the score assessed. Visualization of a digital slide on a screen through a dedicated viewer allows selection of the magnification. However, the field of view is rectangular, unlike the circular field of optical microscopy. In addition, the size of the selected area is not evident, and must be calculated. MATERIALS AND METHODS A digital slide morphometric system was conceived to reproduce the various methods published for assessing tumor budding in colorectal cancer. Eighteen international experts in colorectal cancer were invited to participate in a web-based study by assessing tumor budding with five different methods in 100 digital slides. RESULTS The specific areas to be tested by each method were marked by colored circles. The areas were grouped in a target-like pattern and then saved as an .xml file. When a digital slide was opened, the .xml file was imported in order to perform the measurements. Since the morphometric tool is composed of layers that can be freely moved on top of the digital slide, the technique was named digital slide dynamic morphometry. Twelve investigators completed the task, the majority of them performing the multiple evaluations of each of the cases in less than 12 minutes. CONCLUSIONS Digital slide dynamic morphometry has various potential applications and might be a useful tool for the assessment of histologic parameters originally conceived for optical microscopy that need to be quantified.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Color standardization and optimization in Whole Slide Imaging

INTRODUCTION Standardization and validation of the color displayed by digital slides is an important aspect of digital pathology implementation. While the most common reason for color variation is the variance in the protocols and practices in the histology lab, the color displayed can also be affected by variation in capture parameters (for example, illumination and filters), image processing ...

متن کامل

Morphometric and visual evaluation of fibrosis in renal biopsies.

Interstitial fibrosis is an outcome measure of increasing importance in clinical trials of both renal transplantation and native disease, but data on the comparative advantages of fibrosis measurement methods are limited. We compared four morphometric techniques and contrasted these with two visual fibrosis-scoring methods on trichrome-stained slides. Two morphometric methods included whole-sli...

متن کامل

SlideJ: An ImageJ plugin for automated processing of whole slide images

The digital slide, or Whole Slide Image, is a digital image, acquired with specific scanners, that represents a complete tissue sample or cytological specimen at microscopic level. While Whole Slide image analysis is recognized among the most interesting opportunities, the typical size of such images-up to Gpixels- can be very demanding in terms of memory requirements. Thus, while algorithms an...

متن کامل

Validation of a Digital Pathology Whole Slide Imaging System

Digital whole slide imaging (WSI) provides a complement to traditional histopathology assessments of glass tissue slides for toxicologic pathology. WSI allows users to view images of entire slide content, or selected fields at increasing magnifications, and to compare multiple slide images simultaneously. The technology incorporates robust image databases with metadata and search & retrieval ca...

متن کامل

Distributed computing in image analysis using open source frameworks and application to image sharpness assessment of histological whole slide images

BACKGROUND Automated image analysis on virtual slides is evolving rapidly and will play an important role in the future of digital pathology. Due to the image size, the computational cost of processing whole slide images (WSIs) in full resolution is immense. Moreover, image analysis requires well focused images in high magnification. METHODS We present a system that merges virtual microscopy ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره 2  شماره 

صفحات  -

تاریخ انتشار 2011